Cis-acting element prediction
WebCis-regulatory elements are often binding sites for one or more trans-acting factors. To summarize, cis-regulatory elements are present on the same molecule of DNA as the … WebJul 11, 2003 · These TFs bind to the DNA on specific cis-acting regulatory elements (CAREs) and orchestrate the initiation of transcription, which is one of the most important control points in the regulation of gene expression. ... Flow chart of the computational approaches to detect promoters and cis-regulatory elements. 1, Promoter prediction …
Cis-acting element prediction
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WebPLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants … WebAug 26, 2024 · PIN-formed (PIN) proteins are important auxin carriers that participate in the polar distribution of auxin in plants. In this study, 16 ZaPIN genes were identified from the whole genome of Zanthoxylum armatum DC. The physicochemical properties and structure of PIN proteins were determined, and the gene sequences and promoter regions were …
WebMay 4, 2024 · The cis-acting regulatory elements were searched for further studying the underlying molecular mechanisms of SmGATAs in response to various stresses. The types and numbers of cis-acting regulatory elements varied in SmGATA genes ( Supplementary Materials 4: Table S4 ), and the core CAAT box and TATA box account for a relatively … WebJun 22, 2024 · Additionally, cis-acting element prediction shows that all BnaDELLA genes contain light, stress, and hormone-responsive elements on their promoters. The gene ontology (GO) enrichment report indicated that the BnaDELLA gene family might regulate stress responses. Combine with transcriptomic data used in this study, we detected the …
WebSep 1, 2024 · Cis-acting elements analysis suggested that most OsIDD gene transcripts could be induced by various abiotic stresses and phytohormones. ... More importantly, their expression profiles in different tissues/organs and cis-acting elements prediction, and interaction histone modifiers information were determined. Based on phylogenetic … WebLarge-scale prediction of promoter sequences and their contributing cis-acting elements has become routine due to recent advances in transcriptomic …
WebSep 22, 2013 · Background Cis-acting elements are essential genomic sequences that control gene expression. In higher eukaryotes, a series of cis-elements function …
WebCis-acting element prediction showed that there were many photoresponsive elements upstream of the cotton GGPS gene promoter. In the process of plant evolution, complex mechanisms can be formed to sense light intensity and other factors and affect a series of developmental events, such as seed germination and seedling formation [ 45 ]. greek for death isWebThis resource can be used to query co-expression data, GO and cis-regulatory elements annotations, submit user-defined gene sets for motif analysis for Arabidopsis and … flowchart maken microsoftWebThese are several methods for comprehensive cis element prediction. For example, Searching the genome using experimentally reported cis elements. (e.g. AGRIS and … greek for death bringerWebApr 7, 2024 · The results of the prediction and analysis of the BrPAL promoter’s cis-acting elements indicate that BrPAL may respond to light, abiotic stress, and different hormones. Based on the UVA, FR, high-temperature, low-temperature, drought, salt stress, IAA, ABA, and MeJA treatments of PAL family genes, qRT-PCR expression analysis of purple leaf ... flowchart maker app for pcWebA single mRNA transcript includes all three enzyme-coding sequences and is called polycistronic. A cistron is equivalent to a gene. Figure 6.1. 1: Diagram of a segment of an E. coli chromosome containing the lac operon, as well as the lacI coding region. The various genes and cis- elements are not drawn to scale. greek forestwayWebWe present a computational pipeline to predict cis-regulatory elements composing results based on different algorithms: Clover, Cluster-Buster, an own implementation of human/rat/mouse sequence identity and our ITB algorithm. The procedure uses information from the human genome sequence, NCBI gene annotations, verified eukaryotic … greek forces won the battle of marathonWebMay 27, 2024 · Cis-acting elements prediction. Analysis of cis-acting elements in the VvWRKYs promoters provided the basis for the understanding of potential regulation … flowchart maker for c programming